In BIOS: FDD-1, PCMCIA, HDD-1
(I've never used system commander, however, I will assume it is
similiar to IBM BootManager, which I do use - if it isn't, just
ignore this)
After installing Win95, go into fdisk, choose the system-commander
partition, and set it "active."
In order to use Linux, you will have needed to install LILO on the
Linux root partition (*not* the MBR)
Should work, let me know!
-adam